vcfconcat.c Add --regions/--targets-overlap pos|record|variant mnemonic options Feb 17, 2022 vcfconvert.c Add --regions/--targets-overlap pos|record|variant mnemonic options Feb 17, 2022 vcffilter.c Add --regions/--targets-overlap pos|record|variant mnemonic options Feb 17, 2022 vcfgtcheck...
vcfconvert.c Add short option -W for --write-index. Mar 28, 2024 vcffilter.c Add short option -W for --write-index. Mar 28, 2024 vcfgtcheck.c Fix error in DCv2 output Jun 7, 2024 vcfhead.c New -s, --samples option to include the #CHROM header line with sam… Nov 4, 2023...
convert: New --gensample2vcf option; change in --gensample output, 10年前 variantkey.h Update variantkey with the new header-only version 6年前 vcfannotate.c Add --single-overlaps option to invoke the pre-af6f0c9 behavior. Resol… ...
老师,我的db文件夹里显示了所有染色体都已经导入,但是在将gvcf转换成vcf时,发现在Lc2Ns染色体就结束完成了,这是正常现象嘛,是我使用的近源种参考基因组的原因嘛?我的是简化基因组测序的 1 回答 老师,问题比较复杂,麻烦您看一下详细的问题描述,小麦基因组 1 回答 按照您昨天提供的IndexFeatureFile 工具来构建g...
+gvcfz: compress gVCF file by resizing gVCF blocks according to specified criteria +indel-stats: collect various indel-specific statistics +parental-origin: determine parental origin of a CNV region +remove-overlaps: remove overlapping variants. ...
在研究了一阵后,发现是APT如果在安装某个包中断后,以后再安装什么都会汇报依赖那个包失败。因此linux-...
Add new-a, --absentoption which allows to set positions with no supporting evidence to "N" (or any other character). (#848;#940) bcftools convert: The option--vcf-idsnow works also with-haplegendsample2vcf. (#1217) New option--keep-duplicates ...
The FILE format is --- MaleSample M FemaleSample F --- *--vcf-ids*:: output VCF IDs in the second column instead of CHROM:POS_REF_ALT === gVCF conversion: *--gvcf2vcf*:: convert gVCF to VCF, expanding REF blocks into sites. Note that the *-i* and *-e* options work differ...
vcfconcat.c Use--output-typeto override the default compression level Sep 16, 2021 vcfconvert.c Use--output-typeto override the default compression level Sep 16, 2021 vcffilter.c Use--output-typeto override the default compression level ...
" -g, --group-by EXPR Group gVCF blocks according to the expression\n" " -o, --output FILE Write gVCF output to the FILE\n" " -O, --output-type u|b|v|z[0-9] u/b: un/compressed BCF, v/z: un/compressed VCF, 0-9: compression level [v]\n" " --write-index[=FMT] Aut...