Fgbio is a set of command line tools to perform bioinformatic/genomic data analysis. The collection of tools withinfgbioare used by our customers and others both for ad-hoc data analysis and within production pipelines. These tools typically operate on read-level data (ex. FASTQ, SAM, or BAM...
Tools for working with genomic and high throughput sequencing data. bioinformatics scala genomics ngs umi analyzing-genomic-data fgbio molecular-indexes Updated Sep 23, 2024 Scala msk-access / bam_collapsing Star 0 Code Issues Pull requests Workflow for collapsing of standard binary alignment ...
tools: - fgbio: description: Tools for working with genomic and high throughput sequencing data. Expand All @@ -17,11 +16,17 @@ input: description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false, collapse:false ] - bam: - grouped_bam: type: file desc...